J4_9Q2O_008

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

9Q2O|1|5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2O|1|5|C|3696
9Q2O|1|5|U|3697
9Q2O|1|5|G|3698
*
9Q2O|1|5|C|3752
9Q2O|1|5|G|3753
*
9Q2O|1|5|C|3771
9Q2O|1|5|U|3772
9Q2O|1|5|U|3773
9Q2O|1|5|A|3774
9Q2O|1|5|A|3775
9Q2O|1|5|G|3776
9Q2O|1|5|G|3777
9Q2O|1|5|U|3778
9Q2O|1|5|A|3779
9Q2O|1|5|G|3780
*
9Q2O|1|5|U|3814
9Q2O|1|5|G|3815
9Q2O|1|5|A|3816
9Q2O|1|5|A|3817
9Q2O|1|5|U|3818
9Q2O|1|5|G|3819

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain A

60S ribosomal protein L8

Chain n

eL41