J4_9Q2O_013
3D structure
- PDB id
- 9Q2O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GUAG*CGCG*CGAGGCCC*GC
- Length
- 18 nucleotides
- Bulged bases
- 9Q2O|1|AT|U|8, 9Q2O|1|AT|C|47, 9Q2O|1|AT|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9Q2O_013 not in the Motif Atlas
- Homologous match to J4_1QF6_001
- Geometric discrepancy: 0.544
- The information below is about J4_1QF6_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_51436.1
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
9Q2O|1|AT|G|7
9Q2O|1|AT|U|8
9Q2O|1|AT|A|9
9Q2O|1|AT|G|10
*
9Q2O|1|AT|C|25
9Q2O|1|AT|G|26
9Q2O|1|AT|C|27
9Q2O|1|AT|G|28
*
9Q2O|1|AT|C|42
9Q2O|1|AT|G|43
9Q2O|1|AT|A|44
9Q2O|1|AT|G|45
9Q2O|1|AT|G|46
9Q2O|1|AT|C|47
9Q2O|1|AT|C|48
9Q2O|1|AT|C|49
*
9Q2O|1|AT|G|65
9Q2O|1|AT|C|66
Current chains
- Chain AT
- Ala-tRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain PP
- Small ribosomal subunit protein uS19
Coloring options: