J4_9Q2T_004

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

9Q2T|1|5|A|2366, 9Q2T|1|5|U|2369, 9Q2T|1|5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2T|1|5|C|2365
9Q2T|1|5|A|2366
9Q2T|1|5|A|2367
9Q2T|1|5|A|2368
9Q2T|1|5|U|2369
9Q2T|1|5|A|2370
9Q2T|1|5|U|2371
*
9Q2T|1|5|A|2389
9Q2T|1|5|G|2390
9Q2T|1|5|G|2391
*
9Q2T|1|5|C|2824
9Q2T|1|5|A|2825
9Q2T|1|5|U|2826
9Q2T|1|5|G|2827
9Q2T|1|5|U|2828
9Q2T|1|5|U|2829
*
9Q2T|1|5|A|3856
9Q2T|1|5|G|3857

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

60S ribosomal protein L17

Chain R

60S ribosomal protein L19

Chain d

60S ribosomal protein L31