J4_9Q2T_010
3D structure
- PDB id
- 9Q2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GUAA*UC*GUG*CGCC
- Length
- 13 nucleotides
- Bulged bases
- 9Q2T|1|5|U|4677
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9Q2T_010 not in the Motif Atlas
- Homologous match to J4_8GLP_013
- Geometric discrepancy: 0.1628
- The information below is about J4_8GLP_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69783.1
- Basepair signature
- cWW-F-F-F-F-cWW-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9Q2T|1|5|G|4587
9Q2T|1|5|U|4588
9Q2T|1|5|A|4589
9Q2T|1|5|A|4590
*
9Q2T|1|5|U|4620
9Q2T|1|5|C|4621
*
9Q2T|1|5|G|4676
9Q2T|1|5|U|4677
9Q2T|1|5|G|4678
*
9Q2T|1|5|C|4712
9Q2T|1|5|G|4713
9Q2T|1|5|C|4714
9Q2T|1|5|C|4715
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain O
- Large ribosomal subunit protein uL13
- Chain V
- Large ribosomal subunit protein uL14
Coloring options: