J4_9Q2T_011

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

9Q2T|1|9|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2T|1|9|C|98
9Q2T|1|9|A|99
9Q2T|1|9|U|100
9Q2T|1|9|U|101
9Q2T|1|9|A|102
9Q2T|1|9|A|103
9Q2T|1|9|A|104
9Q2T|1|9|U|105
9Q2T|1|9|C|106
*
9Q2T|1|9|G|355
9Q2T|1|9|C|356
9Q2T|1|9|C|357
*
9Q2T|1|9|G|405
9Q2T|1|9|U|406
9Q2T|1|9|G|407
9Q2T|1|9|A|408
9Q2T|1|9|C|409
*
9Q2T|1|9|G|431
9Q2T|1|9|G|432

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain II

40S ribosomal protein S8

Chain LL

Small ribosomal subunit protein uS17

Chain XX

40S ribosomal protein S23