J4_9Q3Q_001

3D structure

PDB id

9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.01 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9Q3Q|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9Q3Q_001 not in the Motif Atlas

Homologous match to J4_8B0X_004

Geometric discrepancy: 0.0446

The information below is about J4_8B0X_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.3

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9Q3Q|1|A|C|268
9Q3Q|1|A|C|269
*
9Q3Q|1|A|G|370
9Q3Q|1|A|A|371
9Q3Q|1|A|G|372
9Q3Q|1|A|U|373
9Q3Q|1|A|A|374
9Q3Q|1|A|G|375
*
9Q3Q|1|A|U|399
9Q3Q|1|A|G|400
9Q3Q|1|A|A|401
9Q3Q|1|A|A|402
9Q3Q|1|A|U|403
9Q3Q|1|A|A|404
9Q3Q|1|A|U|405
9Q3Q|1|A|G|406
*
9Q3Q|1|A|C|421
9Q3Q|1|A|A|422
9Q3Q|1|A|A|423
9Q3Q|1|A|G|424

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain H

Large ribosomal subunit protein bL9

Chain Z

50S ribosomal protein L28