J4_9Q3Q_008

3D structure

PDB id

9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.01 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9Q3Q_008 not in the Motif Atlas

Homologous match to J4_8B0X_011

Geometric discrepancy: 0.0345

The information below is about J4_8B0X_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9Q3Q|1|A|A|1772
9Q3Q|1|A|A|1773
9Q3Q|1|A|C|1774
9Q3Q|1|A|U|1775
9Q3Q|1|A|G|1776
*
9Q3Q|1|A|C|1788
9Q3Q|1|A|A|1789
9Q3Q|1|A|C|1790
9Q3Q|1|A|A|1791
9Q3Q|1|A|G|1792
*
9Q3Q|1|A|U|1827
9Q3Q|1|A|G|1828
9Q3Q|1|A|A|1829
9Q3Q|1|A|C|1830
*
9Q3Q|1|A|G|1975
9Q3Q|1|A|U|1976
9Q3Q|1|A|A|1977
9Q3Q|1|A|A|1978
9Q3Q|1|A|U|1979

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2