J4_9Q3R_002
3D structure
- PDB id
- 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- GGAAG*CGCG*CAG*CGUAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9Q3R_002 not in the Motif Atlas
- Homologous match to J4_8B0X_005
- Geometric discrepancy: 0.0426
- The information below is about J4_8B0X_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_16174.1
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
9Q3R|1|A|G|297
9Q3R|1|A|G|298
9Q3R|1|A|A|299
9Q3R|1|A|A|300
9Q3R|1|A|G|301
*
9Q3R|1|A|C|316
9Q3R|1|A|G|317
9Q3R|1|A|C|318
9Q3R|1|A|G|319
*
9Q3R|1|A|C|323
9Q3R|1|A|A|324
9Q3R|1|A|G|325
*
9Q3R|1|A|C|337
9Q3R|1|A|G|338
9Q3R|1|A|U|339
9Q3R|1|A|A|340
9Q3R|1|A|C|341
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL4
- Chain W
- 50S ribosomal protein L24
Coloring options: