J4_9Q3R_005

3D structure

PDB id

9Q3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

9Q3R|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q3R|1|A|G|1310
9Q3R|1|A|G|1311
9Q3R|1|A|U|1312
9Q3R|1|A|U|1313
9Q3R|1|A|C|1314
*
9Q3R|1|A|G|1338
9Q3R|1|A|G|1339
9Q3R|1|A|U|1340
9Q3R|1|A|G|1341
9Q3R|1|A|A|1342
9Q3R|1|A|G|1343
*
9Q3R|1|A|C|1404
9Q3R|1|A|U|1405
*
9Q3R|1|A|A|1597
9Q3R|1|A|A|1598
9Q3R|1|A|U|1599
9Q3R|1|A|C|1600
9Q3R|1|A|G|1601
9Q3R|1|A|U|1602
9Q3R|1|A|A|1603
9Q3R|1|A|C|1604

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain V

50S ribosomal protein L23