J4_9Q6Q_014

3D structure

PDB id

9Q6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-18 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

9Q6Q|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9Q6Q_014 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.234

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.4

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

12

Unit IDs

9Q6Q|1|2A|C|268
9Q6Q|1|2A|U|269
*
9Q6Q|1|2A|G|370
9Q6Q|1|2A|A|371
9Q6Q|1|2A|G|372
9Q6Q|1|2A|U|373
9Q6Q|1|2A|A|374
9Q6Q|1|2A|C|375
*
9Q6Q|1|2A|G|399
9Q6Q|1|2A|G|400
9Q6Q|1|2A|A|401
9Q6Q|1|2A|A|402
9Q6Q|1|2A|U|403
9Q6Q|1|2A|C|404
9Q6Q|1|2A|U|405
9Q6Q|1|2A|G|406
*
9Q6Q|1|2A|U|421
9Q6Q|1|2A|A|422
9Q6Q|1|2A|A|423
9Q6Q|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9