J4_9Q6R_026

3D structure

PDB id

9Q6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-27 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GGG*CGAAAG*CCCUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

9Q6R|1|2a|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9Q6R_026 not in the Motif Atlas

Homologous match to J4_8B0X_003

Geometric discrepancy: 0.0877

The information below is about J4_8B0X_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.4

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-cWW-F

Number of instances in this motif group

7

Unit IDs

9Q6R|1|2a|G|575
9Q6R|1|2a|G|576
9Q6R|1|2a|G|577
*
9Q6R|1|2a|C|764
9Q6R|1|2a|G|765
9Q6R|1|2a|A|766
9Q6R|1|2a|A|767
9Q6R|1|2a|A|768
9Q6R|1|2a|G|769
*
9Q6R|1|2a|C|810
9Q6R|1|2a|C|811
9Q6R|1|2a|C|812
9Q6R|1|2a|U|813
9Q6R|1|2a|A|814
9Q6R|1|2a|A|815
9Q6R|1|2a|A|816
9Q6R|1|2a|C|817
9Q6R|1|2a|G|818
9Q6R|1|2a|A|819
9Q6R|1|2a|U|820
9Q6R|1|2a|G|821
*
9Q6R|1|2a|C|879
9Q6R|1|2a|C|880

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2h

30S ribosomal protein S8

Chain 2l

30S ribosomal protein S12

Chain 2o

30S ribosomal protein S15

Chain 2q

30S ribosomal protein S17