J4_9Q6S_018

3D structure

PDB id

9Q6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-30 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

9Q6S|1|2A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9Q6S_018 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.1411

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.2

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9Q6S|1|2A|U|1313
9Q6S|1|2A|C|1314
*
9Q6S|1|2A|G|1338
9Q6S|1|2A|G|1339
9Q6S|1|2A|U|1340
9Q6S|1|2A|U|1341
9Q6S|1|2A|A|1342
9Q6S|1|2A|G|1343
*
9Q6S|1|2A|C|1404
9Q6S|1|2A|U|1405
*
9Q6S|1|2A|A|1597
9Q6S|1|2A|C|1598
9Q6S|1|2A|C|1599
9Q6S|1|2A|C|1600
9Q6S|1|2A|G|1601
9Q6S|1|2A|U|1602
9Q6S|1|2A|A|1603

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23