J4_9Q6T_019

3D structure

PDB id

9Q6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin and protein Y at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

9Q6T|1|2A|A|1445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9Q6T_019 not in the Motif Atlas

Homologous match to J4_8B0X_010

Geometric discrepancy: 0.3344

The information below is about J4_8B0X_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9Q6T|1|2A|G|1444
9Q6T|1|2A|A|1445
9Q6T|1|2A|C|1445|||A
*
9Q6T|1|2A|G|1466
9Q6T|1|2A|C|1467
*
9Q6T|1|2A|G|1525
9Q6T|1|2A|G|1526
*
9Q6T|1|2A|C|1546
9Q6T|1|2A|C|1547

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains