J4_9Q6V_023

3D structure

PDB id

9Q6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin-31 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9Q6V_023 not in the Motif Atlas

Homologous match to J4_8B0X_014

Geometric discrepancy: 0.1385

The information below is about J4_8B0X_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9Q6V|1|2A|G|2643
9Q6V|1|2A|G|2644
9Q6V|1|2A|G|2645
9Q6V|1|2A|C|2646
*
9Q6V|1|2A|G|2674
9Q6V|1|2A|A|2675
9Q6V|1|2A|C|2676
*
9Q6V|1|2A|G|2731
9Q6V|1|2A|G|2732
9Q6V|1|2A|A|2733
9Q6V|1|2A|A|2734
9Q6V|1|2A|G|2735
*
9Q6V|1|2A|C|2769
9Q6V|1|2A|G|2770
9Q6V|1|2A|C|2771

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13

Chain 2O

50S ribosomal protein L14