J4_9Q7Q_001
3D structure
- PDB id
- 9Q7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- ABCE1-eRF1-RNC-AMD1C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GUGG*CGU*AAGAUUC*GC
- Length
- 16 nucleotides
- Bulged bases
- 9Q7Q|1|2|U|9, 9Q7Q|1|2|U|47, 9Q7Q|1|2|U|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9Q7Q_001 not in the Motif Atlas
- Homologous match to J4_1IL2_001
- Geometric discrepancy: 0.2183
- The information below is about J4_1IL2_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.2
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 49
Unit IDs
9Q7Q|1|2|G|8
9Q7Q|1|2|U|9
9Q7Q|1|2|G|10
9Q7Q|1|2|G|11
*
9Q7Q|1|2|C|25
9Q7Q|1|2|G|26
9Q7Q|1|2|U|27
*
9Q7Q|1|2|A|43
9Q7Q|1|2|A|44
9Q7Q|1|2|G|45
9Q7Q|1|2|A|46
9Q7Q|1|2|U|47
9Q7Q|1|2|U|48
9Q7Q|1|2|C|49
*
9Q7Q|1|2|G|65
9Q7Q|1|2|C|66
Current chains
- Chain 2
- tRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain I
- 60S ribosomal protein L10
- Chain K
- Small subunit ribosomal RNA; SSU rRNA
- Chain RF
- Eukaryotic peptide chain release factor subunit 1
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