J4_9Q7Q_012

3D structure

PDB id

9Q7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

ABCE1-eRF1-RNC-AMD1C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

9Q7Q|1|K|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9Q7Q_012 not in the Motif Atlas

Homologous match to J4_9H3G_013

Geometric discrepancy: 0.1674

The information below is about J4_9H3G_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_15241.5

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW

Number of instances in this motif group

5

Unit IDs

9Q7Q|1|K|C|98
9Q7Q|1|K|A|99
9Q7Q|1|K|U|100
9Q7Q|1|K|U|101
9Q7Q|1|K|A|102
9Q7Q|1|K|A|103
9Q7Q|1|K|A|104
9Q7Q|1|K|U|105
9Q7Q|1|K|C|106
*
9Q7Q|1|K|G|355
9Q7Q|1|K|C|356
9Q7Q|1|K|C|357
*
9Q7Q|1|K|G|405
9Q7Q|1|K|U|406
9Q7Q|1|K|G|407
9Q7Q|1|K|A|408
9Q7Q|1|K|C|409
*
9Q7Q|1|K|G|431
9Q7Q|1|K|G|432

Current chains

Chain K

18S rRNA

Nearby chains

Chain CC

eS8

Chain EE

Ribosomal protein S11

Chain VV

uS12

Chain x

Small ribosomal subunit protein eS4