J4_9Q87_001

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9Q87|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9Q87_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.3247

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9Q87|1|A|G|115
9Q87|1|A|A|116
9Q87|1|A|G|117
9Q87|1|A|U|118
9Q87|1|A|A|119
9Q87|1|A|A|120
9Q87|1|A|U|121
9Q87|1|A|G|122
*
9Q87|1|A|U|239
9Q87|1|A|G|240
*
9Q87|1|A|C|286
9Q87|1|A|U|287
9Q87|1|A|A|288
9Q87|1|A|G|289
*
9Q87|1|A|C|311
9Q87|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain Q

Small ribosomal subunit protein uS17