J4_9Q87_005

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9Q87|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9Q87_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1137

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9Q87|1|a|C|268
9Q87|1|a|C|269
*
9Q87|1|a|G|370
9Q87|1|a|A|371
9Q87|1|a|G|372
9Q87|1|a|U|373
9Q87|1|a|A|374
9Q87|1|a|G|375
*
9Q87|1|a|U|399
9Q87|1|a|G|400
9Q87|1|a|A|401
9Q87|1|a|A|402
9Q87|1|a|U|403
9Q87|1|a|A|404
9Q87|1|a|U|405
9Q87|1|a|G|406
*
9Q87|1|a|C|421
9Q87|1|a|A|422
9Q87|1|a|A|423
9Q87|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28