J4_9Q87_008
3D structure
- PDB id
- 9Q87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- CGAUAAA*UC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 9Q87|1|a|G|1273, 9Q87|1|a|A|1274, 9Q87|1|a|U|1275, 9Q87|1|a|U|1649
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9Q87_008 not in the Motif Atlas
- Homologous match to J4_5J7L_021
- Geometric discrepancy: 0.0438
- The information below is about J4_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
9Q87|1|a|C|1272
9Q87|1|a|G|1273
9Q87|1|a|A|1274
9Q87|1|a|U|1275
9Q87|1|a|A|1276
9Q87|1|a|A|1277
9Q87|1|a|A|1278
*
9Q87|1|a|U|1296
9Q87|1|a|C|1297
*
9Q87|1|a|G|1647
9Q87|1|a|C|1648
9Q87|1|a|U|1649
9Q87|1|a|U|1650
*
9Q87|1|a|A|2013
9Q87|1|a|G|2014
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain m
- Large ribosomal subunit protein bL17
- Chain r
- Large ribosomal subunit protein uL22
- Chain z
- Large ribosomal subunit protein bL32
Coloring options: