J4_9Q87_010

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

9Q87|1|a|G|1343

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9Q87_010 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0354

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9Q87|1|a|U|1315
9Q87|1|a|C|1316
*
9Q87|1|a|G|1340
9Q87|1|a|G|1341
9Q87|1|a|U|1342
9Q87|1|a|G|1343
9Q87|1|a|A|1344
9Q87|1|a|G|1345
*
9Q87|1|a|C|1406
9Q87|1|a|U|1407
*
9Q87|1|a|A|1599
9Q87|1|a|A|1600
9Q87|1|a|U|1601
9Q87|1|a|C|1602
9Q87|1|a|G|1603
9Q87|1|a|U|1604
9Q87|1|a|A|1605

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23