J4_9Q87_011
3D structure
- PDB id
- 9Q87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- GG*UU*AC*GC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9Q87_011 not in the Motif Atlas
- Homologous match to J4_5J7L_024
- Geometric discrepancy: 0.0567
- The information below is about J4_5J7L_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_24280.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9Q87|1|a|G|1446
9Q87|1|a|G|1447
*
9Q87|1|a|U|1468
9Q87|1|a|U|1469
*
9Q87|1|a|A|1527
9Q87|1|a|C|1528
*
9Q87|1|a|G|1548
9Q87|1|a|C|1549
Current chains
- Chain a
- 23S rRNA
Nearby chains
No other chains within 10ÅColoring options: