J4_9Q87_013
3D structure
- PDB id
- 9Q87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- CU(2MG)*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9Q87|1|a|U|1975
- QA status
- Modified nucleotides: 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9Q87_013 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.1012
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
9Q87|1|a|C|1835
9Q87|1|a|U|1836
9Q87|1|a|2MG|1837
*
9Q87|1|a|C|1909
9Q87|1|a|G|1910
*
9Q87|1|a|C|1928
9Q87|1|a|C|1929
9Q87|1|a|U|1930
9Q87|1|a|A|1931
9Q87|1|a|A|1932
9Q87|1|a|G|1933
9Q87|1|a|G|1934
9Q87|1|a|U|1935
9Q87|1|a|A|1936
9Q87|1|a|G|1937
*
9Q87|1|a|C|1971
9Q87|1|a|G|1972
9Q87|1|a|A|1973
9Q87|1|a|A|1974
9Q87|1|a|U|1975
9Q87|1|a|G|1976
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain Z
- Transfer RNA; tRNA
- Chain c
- Large ribosomal subunit protein uL2
Coloring options: