J4_9Q87_015
3D structure
- PDB id
- 9Q87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- GGGC*GAC*GGAAG*UGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9Q87_015 not in the Motif Atlas
- Homologous match to J4_5J7L_028
- Geometric discrepancy: 0.0484
- The information below is about J4_5J7L_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.4
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
9Q87|1|a|G|2647
9Q87|1|a|G|2648
9Q87|1|a|G|2649
9Q87|1|a|C|2650
*
9Q87|1|a|G|2678
9Q87|1|a|A|2679
9Q87|1|a|C|2680
*
9Q87|1|a|G|2735
9Q87|1|a|G|2736
9Q87|1|a|A|2737
9Q87|1|a|A|2738
9Q87|1|a|G|2739
*
9Q87|1|a|U|2773
9Q87|1|a|G|2774
9Q87|1|a|C|2775
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- Large ribosomal subunit protein uL3
- Chain i
- Large ribosomal subunit protein uL13
- Chain j
- Large ribosomal subunit protein uL14
Coloring options: