J4_9QEG_007

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

UC*GGUUAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

9QEG|1|A|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9QEG_007 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.0742

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9QEG|1|A|U|1350
9QEG|1|A|C|1351
*
9QEG|1|A|G|1375
9QEG|1|A|G|1376
9QEG|1|A|U|1377
9QEG|1|A|U|1378
9QEG|1|A|A|1379
9QEG|1|A|G|1380
*
9QEG|1|A|C|1441
9QEG|1|A|C|1442
*
9QEG|1|A|G|1641
9QEG|1|A|C|1642
9QEG|1|A|C|1643
9QEG|1|A|C|1644
9QEG|1|A|G|1645
9QEG|1|A|U|1646
9QEG|1|A|A|1647

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain R

Large ribosomal subunit protein uL23