3D structure

PDB id
9QEG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin
Experimental method
ELECTRON MICROSCOPY
Resolution
2.21 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
9QEG|1|Aa|C|584, 9QEG|1|Aa|A|823
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9QEG_015 not in the Motif Atlas
Homologous match to J4_5J7L_003
Geometric discrepancy: 0.0494
The information below is about J4_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

9QEG|1|Aa|G|583
9QEG|1|Aa|C|584
9QEG|1|Aa|G|585
*
9QEG|1|Aa|C|772
9QEG|1|Aa|G|773
9QEG|1|Aa|A|774
9QEG|1|Aa|A|775
9QEG|1|Aa|A|776
9QEG|1|Aa|G|777
*
9QEG|1|Aa|C|818
9QEG|1|Aa|C|819
9QEG|1|Aa|G|820
9QEG|1|Aa|U|821
9QEG|1|Aa|A|822
9QEG|1|Aa|A|823
9QEG|1|Aa|A|824
9QEG|1|Aa|C|825
9QEG|1|Aa|G|826
9QEG|1|Aa|A|827
9QEG|1|Aa|U|828
9QEG|1|Aa|G|829
*
9QEG|1|Aa|C|888
9QEG|1|Aa|C|889

Current chains

Chain Aa
16S ribosomal RNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain Ah
Small ribosomal subunit protein uS8
Chain Al
Small ribosomal subunit protein uS12
Chain Ao
Small ribosomal subunit protein uS15
Chain Aq
Small ribosomal subunit protein uS17

Coloring options:


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