J4_9QEG_015
3D structure
- PDB id
- 9QEG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.21 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 9QEG|1|Aa|C|584, 9QEG|1|Aa|A|823
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9QEG_015 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0494
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
9QEG|1|Aa|G|583
9QEG|1|Aa|C|584
9QEG|1|Aa|G|585
*
9QEG|1|Aa|C|772
9QEG|1|Aa|G|773
9QEG|1|Aa|A|774
9QEG|1|Aa|A|775
9QEG|1|Aa|A|776
9QEG|1|Aa|G|777
*
9QEG|1|Aa|C|818
9QEG|1|Aa|C|819
9QEG|1|Aa|G|820
9QEG|1|Aa|U|821
9QEG|1|Aa|A|822
9QEG|1|Aa|A|823
9QEG|1|Aa|A|824
9QEG|1|Aa|C|825
9QEG|1|Aa|G|826
9QEG|1|Aa|A|827
9QEG|1|Aa|U|828
9QEG|1|Aa|G|829
*
9QEG|1|Aa|C|888
9QEG|1|Aa|C|889
Current chains
- Chain Aa
- 16S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ah
- Small ribosomal subunit protein uS8
- Chain Al
- Small ribosomal subunit protein uS12
- Chain Ao
- Small ribosomal subunit protein uS15
- Chain Aq
- Small ribosomal subunit protein uS17
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