J4_9QOH_014

3D structure

PDB id

9QOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome POST translocation state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AUAG*CAG*CGUGUCC*GU

Length

16 nucleotides

Bulged bases

9QOH|1|n2|U|8, 9QOH|1|n2|U|47, 9QOH|1|n2|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9QOH_014 not in the Motif Atlas

Homologous match to J4_5J8B_015

Geometric discrepancy: 0.281

The information below is about J4_5J8B_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_95067.2

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

49

Unit IDs

9QOH|1|n2|A|7
9QOH|1|n2|U|8
9QOH|1|n2|A|9
9QOH|1|n2|G|10
*
9QOH|1|n2|C|25
9QOH|1|n2|A|26
9QOH|1|n2|G|27
*
9QOH|1|n2|C|43
9QOH|1|n2|G|44
9QOH|1|n2|U|45
9QOH|1|n2|G|46
9QOH|1|n2|U|47
9QOH|1|n2|C|48
9QOH|1|n2|C|49
*
9QOH|1|n2|G|65
9QOH|1|n2|U|66

Current chains

Chain n2

transfer RNA

Nearby chains

Chain i2

Large ribosomal subunit protein eL42

Chain m2

Small subunit ribosomal RNA; SSU rRNA

Chain s2

Small ribosomal subunit protein uS7