J4_9QQA_006

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CC*GAGGGAG*UGUCGCCG*CACGGGG

Length

24 nucleotides

Bulged bases

9QQA|1|B5|G|859, 9QQA|1|B5|U|873, 9QQA|1|B5|C|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQA|1|B5|C|706
9QQA|1|B5|C|707
*
9QQA|1|B5|G|855
9QQA|1|B5|A|856
9QQA|1|B5|G|857
9QQA|1|B5|G|858
9QQA|1|B5|G|859
9QQA|1|B5|A|860
9QQA|1|B5|G|861
*
9QQA|1|B5|U|871
9QQA|1|B5|G|872
9QQA|1|B5|U|873
9QQA|1|B5|C|874
9QQA|1|B5|G|875
9QQA|1|B5|C|876
9QQA|1|B5|C|877
9QQA|1|B5|G|878
*
9QQA|1|B5|C|1222
9QQA|1|B5|A|1223
9QQA|1|B5|C|1224
9QQA|1|B5|G|1225
9QQA|1|B5|G|1226
9QQA|1|B5|G|1227
9QQA|1|B5|G|1228

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

Large ribosomal subunit protein uL4

Chain BE

60S ribosomal protein L6

Chain BF

Ribosomal Protein uL30

Chain Be

Ribosomal protein L32