J4_9QQB_006

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CC*GAGGGAG*UGUCGCCG*CACGGGG

Length

24 nucleotides

Bulged bases

9QQB|1|B5|G|859, 9QQB|1|B5|U|873, 9QQB|1|B5|C|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQB|1|B5|C|706
9QQB|1|B5|C|707
*
9QQB|1|B5|G|855
9QQB|1|B5|A|856
9QQB|1|B5|G|857
9QQB|1|B5|G|858
9QQB|1|B5|G|859
9QQB|1|B5|A|860
9QQB|1|B5|G|861
*
9QQB|1|B5|U|871
9QQB|1|B5|G|872
9QQB|1|B5|U|873
9QQB|1|B5|C|874
9QQB|1|B5|G|875
9QQB|1|B5|C|876
9QQB|1|B5|C|877
9QQB|1|B5|G|878
*
9QQB|1|B5|C|1222
9QQB|1|B5|A|1223
9QQB|1|B5|C|1224
9QQB|1|B5|G|1225
9QQB|1|B5|G|1226
9QQB|1|B5|G|1227
9QQB|1|B5|G|1228

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

Large ribosomal subunit protein uL4

Chain BE

60S ribosomal protein L6

Chain BF

Ribosomal Protein uL30

Chain Be

Ribosomal protein L32