J4_9QQL_010
3D structure
- PDB id
- 9QQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse RPS15 P131 Mutant Ribosome POST translocation state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 9QQL|1|Bv|U|8, 9QQL|1|Bv|U|47, 9QQL|1|Bv|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9QQL_010 not in the Motif Atlas
- Homologous match to J4_6UGG_002
- Geometric discrepancy: 0.1945
- The information below is about J4_6UGG_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.2
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 49
Unit IDs
9QQL|1|Bv|A|7
9QQL|1|Bv|U|8
9QQL|1|Bv|A|9
9QQL|1|Bv|G|10
*
9QQL|1|Bv|C|25
9QQL|1|Bv|A|26
9QQL|1|Bv|G|27
*
9QQL|1|Bv|C|43
9QQL|1|Bv|G|44
9QQL|1|Bv|U|45
9QQL|1|Bv|G|46
9QQL|1|Bv|U|47
9QQL|1|Bv|C|48
9QQL|1|Bv|C|49
*
9QQL|1|Bv|G|65
9QQL|1|Bv|U|66
Current chains
- Chain Bv
- transfer RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain D1
- Large ribosomal subunit protein uL16
- Chain R3
- Small ribosomal subunit protein eS25
- Chain m2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: