J4_9QQL_013

3D structure

PDB id

9QQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPS15 P131 Mutant Ribosome POST translocation state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

AUAG*CAG*CGUGUCC*GU

Length

16 nucleotides

Bulged bases

9QQL|1|n2|U|8, 9QQL|1|n2|U|47, 9QQL|1|n2|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9QQL_013 not in the Motif Atlas

Homologous match to J4_7MRL_001

Geometric discrepancy: 0.287

The information below is about J4_7MRL_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.2

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

49

Unit IDs

9QQL|1|n2|A|7
9QQL|1|n2|U|8
9QQL|1|n2|A|9
9QQL|1|n2|G|10
*
9QQL|1|n2|C|25
9QQL|1|n2|A|26
9QQL|1|n2|G|27
*
9QQL|1|n2|C|43
9QQL|1|n2|G|44
9QQL|1|n2|U|45
9QQL|1|n2|G|46
9QQL|1|n2|U|47
9QQL|1|n2|C|48
9QQL|1|n2|C|49
*
9QQL|1|n2|G|65
9QQL|1|n2|U|66

Current chains

Chain n2

transfer RNA

Nearby chains

Chain i2

Large ribosomal subunit protein eL42

Chain m2

Small subunit ribosomal RNA; SSU rRNA

Chain s2

Small ribosomal subunit protein uS7