J4_9QQQ_001
3D structure
- PDB id
- 9QQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- GAGUAAUG*UG*CUAG*CC
- Length
- 16 nucleotides
- Bulged bases
- 9QQQ|1|A|U|121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9QQQ_001 not in the Motif Atlas
- Homologous match to J4_6CZR_027
- Geometric discrepancy: 0.5638
- The information below is about J4_6CZR_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_35578.2
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9QQQ|1|A|G|115
9QQQ|1|A|A|116
9QQQ|1|A|G|117
9QQQ|1|A|U|118
9QQQ|1|A|A|119
9QQQ|1|A|A|120
9QQQ|1|A|U|121
9QQQ|1|A|G|122
*
9QQQ|1|A|U|239
9QQQ|1|A|G|240
*
9QQQ|1|A|C|286
9QQQ|1|A|U|287
9QQQ|1|A|A|288
9QQQ|1|A|G|289
*
9QQQ|1|A|C|311
9QQQ|1|A|C|312
Current chains
- Chain A
- E. coli 16S rRNA
Nearby chains
- Chain P
- Small ribosomal subunit protein bS16
- Chain Q
- Small ribosomal subunit protein uS17
Coloring options: