J4_9QQQ_002

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9QQQ|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQQ|1|A|G|142
9QQQ|1|A|A|143
9QQQ|1|A|G|144
*
9QQQ|1|A|C|178
9QQQ|1|A|A|179
9QQQ|1|A|U|180
9QQQ|1|A|A|181
9QQQ|1|A|A|182
9QQQ|1|A|C|183
9QQQ|1|A|G|184
*
9QQQ|1|A|C|193
9QQQ|1|A|C|194
9QQQ|1|A|A|195
9QQQ|1|A|A|196
9QQQ|1|A|A|197
9QQQ|1|A|G|198
*
9QQQ|1|A|U|219
9QQQ|1|A|G|220
9QQQ|1|A|C|221

Current chains

Chain A

E. coli 16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20