J4_9QQQ_007

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9QQQ_007 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1197

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9QQQ|1|a|G|297
9QQQ|1|a|G|298
9QQQ|1|a|A|299
9QQQ|1|a|A|300
9QQQ|1|a|G|301
*
9QQQ|1|a|C|316
9QQQ|1|a|G|317
9QQQ|1|a|C|318
9QQQ|1|a|G|319
*
9QQQ|1|a|C|323
9QQQ|1|a|A|324
9QQQ|1|a|G|325
*
9QQQ|1|a|C|337
9QQQ|1|a|G|338
9QQQ|1|a|U|339
9QQQ|1|a|A|340
9QQQ|1|a|C|341

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24