J4_9QSA_001

3D structure

PDB id

9QSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-1 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9QSA|1|A2|C|309

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QSA|1|A2|C|111
9QSA|1|A2|C|112
*
9QSA|1|A2|G|278
9QSA|1|A2|A|279
9QSA|1|A2|G|280
9QSA|1|A2|U|281
9QSA|1|A2|C|282
9QSA|1|A2|G|283
*
9QSA|1|A2|C|304
9QSA|1|A2|A|305
9QSA|1|A2|A|306
9QSA|1|A2|A|307
9QSA|1|A2|G|308
9QSA|1|A2|C|309
9QSA|1|A2|G|310
*
9QSA|1|A2|U|327
9QSA|1|A2|A|328
9QSA|1|A2|A|329
9QSA|1|A2|G|330

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain F1

Large ribosomal subunit protein eL13

Chain H1

Large ribosomal subunit protein eL15

Chain b2

Large ribosomal subunit protein uL29

Chain c2

Large ribosomal subunit protein eL36