J4_9QSA_004

3D structure

PDB id

9QSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-1 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

(OMC)AAAUAU*AGG*(OMC)AUGUU*AG

Length

18 nucleotides

Bulged bases

9QSA|1|A2|A|2121, 9QSA|1|A2|U|2124, 9QSA|1|A2|U|2583

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QSA|1|A2|OMC|2120
9QSA|1|A2|A|2121
9QSA|1|A2|A|2122
9QSA|1|A2|A|2123
9QSA|1|A2|U|2124
9QSA|1|A2|A|2125
9QSA|1|A2|U|2126
*
9QSA|1|A2|A|2144
9QSA|1|A2|G|2145
9QSA|1|A2|G|2146
*
9QSA|1|A2|OMC|2579
9QSA|1|A2|A|2580
9QSA|1|A2|U|2581
9QSA|1|A2|G|2582
9QSA|1|A2|U|2583
9QSA|1|A2|U|2584
*
9QSA|1|A2|A|3512
9QSA|1|A2|G|3513

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain J2

Large ribosomal subunit protein uL22

Chain L2

Large ribosomal subunit protein eL19

Chain X2

Large ribosomal subunit protein eL31