J4_9QSA_006

3D structure

PDB id

9QSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-1 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGAUG*CAGUGC*GCGACC*GAGGGUGUAAAU

Length

29 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QSA|1|A2|A|2306
9QSA|1|A2|G|2307
9QSA|1|A2|A|2308
9QSA|1|A2|U|2309
9QSA|1|A2|G|2310
*
9QSA|1|A2|C|2327
9QSA|1|A2|A|2328
9QSA|1|A2|G|2329
9QSA|1|A2|U|2330
9QSA|1|A2|G|2331
9QSA|1|A2|C|2332
*
9QSA|1|A2|G|2339
9QSA|1|A2|C|2340
9QSA|1|A2|G|2341
9QSA|1|A2|A|2342
9QSA|1|A2|C|2343
9QSA|1|A2|C|2344
*
9QSA|1|A2|G|2511
9QSA|1|A2|A|2512
9QSA|1|A2|G|2513
9QSA|1|A2|G|2514
9QSA|1|A2|G|2515
9QSA|1|A2|U|2516
9QSA|1|A2|G|2517
9QSA|1|A2|U|2518
9QSA|1|A2|A|2519
9QSA|1|A2|A|2520
9QSA|1|A2|A|2521
9QSA|1|A2|U|2522

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain T2

Large ribosomal subunit protein eL27

Chain a2

Large ribosomal subunit protein eL34