J4_9QSA_009

3D structure

PDB id

9QSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-1 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAA(OMU)G

Length

21 nucleotides

Bulged bases

9QSA|1|A2|U|3429, 9QSA|1|A2|OMU|3474

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QSA|1|A2|C|3352
9QSA|1|A2|U|3353
9QSA|1|A2|G|3354
*
9QSA|1|A2|C|3408
9QSA|1|A2|G|3409
*
9QSA|1|A2|C|3427
9QSA|1|A2|U|3428
9QSA|1|A2|U|3429
9QSA|1|A2|A|3430
9QSA|1|A2|A|3431
9QSA|1|A2|G|3432
9QSA|1|A2|G|3433
9QSA|1|A2|U|3434
9QSA|1|A2|A|3435
9QSA|1|A2|G|3436
*
9QSA|1|A2|U|3470
9QSA|1|A2|G|3471
9QSA|1|A2|A|3472
9QSA|1|A2|A|3473
9QSA|1|A2|OMU|3474
9QSA|1|A2|G|3475

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain D2

Large ribosomal subunit protein uL2

Chain h2

60S ribosomal protein L41

Chain m2

Small subunit ribosomal RNA; SSU rRNA

Chain n2

Transfer RNA; tRNA