J4_9QSJ_001

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9QSJ|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9QSJ_001 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.5751

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9QSJ|1|A|G|115
9QSJ|1|A|A|116
9QSJ|1|A|G|117
9QSJ|1|A|U|118
9QSJ|1|A|A|119
9QSJ|1|A|A|120
9QSJ|1|A|U|121
9QSJ|1|A|G|122
*
9QSJ|1|A|U|239
9QSJ|1|A|G|240
*
9QSJ|1|A|C|286
9QSJ|1|A|U|287
9QSJ|1|A|A|288
9QSJ|1|A|G|289
*
9QSJ|1|A|C|311
9QSJ|1|A|C|312

Current chains

Chain A

E. coli 16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain Q

Small ribosomal subunit protein uS17