J4_9QSJ_007

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9QSJ_007 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1066

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9QSJ|1|a|G|297
9QSJ|1|a|G|298
9QSJ|1|a|A|299
9QSJ|1|a|A|300
9QSJ|1|a|G|301
*
9QSJ|1|a|C|316
9QSJ|1|a|G|317
9QSJ|1|a|C|318
9QSJ|1|a|G|319
*
9QSJ|1|a|C|323
9QSJ|1|a|A|324
9QSJ|1|a|G|325
*
9QSJ|1|a|C|337
9QSJ|1|a|G|338
9QSJ|1|a|U|339
9QSJ|1|a|A|340
9QSJ|1|a|C|341

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24