J4_9R3A_005
3D structure
- PDB id
- 9R3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Stalled Beta-Galactosidase 70S Ribosome Nascent Chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- AUAG*CAC*GGGGUCG*UU
- Length
- 16 nucleotides
- Bulged bases
- 9R3A|1|Z|U|8
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9R3A_005 not in the Motif Atlas
- Homologous match to J4_1H4S_001
- Geometric discrepancy: 0.2352
- The information below is about J4_1H4S_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
9R3A|1|Z|A|7
9R3A|1|Z|U|8
9R3A|1|Z|A|9
9R3A|1|Z|G|10
*
9R3A|1|Z|C|25
9R3A|1|Z|A|26
9R3A|1|Z|C|27
*
9R3A|1|Z|G|43
9R3A|1|Z|G|44
9R3A|1|Z|G|45
9R3A|1|Z|G|46
9R3A|1|Z|U|47
9R3A|1|Z|C|48
9R3A|1|Z|G|49
*
9R3A|1|Z|U|65
9R3A|1|Z|U|66
Current chains
- Chain Z
- P-site tRNA
Nearby chains
- Chain M
- Small ribosomal subunit protein uS13
- Chain Y
- Transfer RNA; tRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- Large ribosomal subunit protein uL16
Coloring options: