J4_9R9P_008

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

9R9P|1|C1|U|2314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9P|1|C1|C|2192
9R9P|1|C1|U|2193
9R9P|1|C1|G|2194
*
9R9P|1|C1|C|2248
9R9P|1|C1|G|2249
*
9R9P|1|C1|C|2267
9R9P|1|C1|U|2268
9R9P|1|C1|U|2269
9R9P|1|C1|A|2270
9R9P|1|C1|A|2271
9R9P|1|C1|G|2272
9R9P|1|C1|G|2273
9R9P|1|C1|U|2274
9R9P|1|C1|A|2275
9R9P|1|C1|G|2276
*
9R9P|1|C1|U|2310
9R9P|1|C1|G|2311
9R9P|1|C1|A|2312
9R9P|1|C1|A|2313
9R9P|1|C1|U|2314
9R9P|1|C1|G|2315

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain LA

60S ribosomal protein L2-A

Chain Ln

Large ribosomal subunit protein eL41B