J4_9R9P_011

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUUAAAUC*GCC*GUAAC*GG

Length

19 nucleotides

Bulged bases

9R9P|1|C2|A|359

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9P|1|C2|C|99
9R9P|1|C2|A|100
9R9P|1|C2|U|101
9R9P|1|C2|U|102
9R9P|1|C2|A|103
9R9P|1|C2|A|104
9R9P|1|C2|A|105
9R9P|1|C2|U|106
9R9P|1|C2|C|107
*
9R9P|1|C2|G|307
9R9P|1|C2|C|308
9R9P|1|C2|C|309
*
9R9P|1|C2|G|357
9R9P|1|C2|U|358
9R9P|1|C2|A|359
9R9P|1|C2|A|360
9R9P|1|C2|C|361
*
9R9P|1|C2|G|383
9R9P|1|C2|G|384

Current chains

Chain C2

RNA (1642-MER)

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SI

40S ribosomal protein S8-A

Chain SL

40S ribosomal protein S11-A

Chain SX

40S ribosomal protein S23-A