J4_9RBF_005
3D structure
- PDB id
- 9RBF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with the membrane protein insertase SecYEG-YidC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- GUAG*CAA*UGGGUCG*UC
- Length
- 16 nucleotides
- Bulged bases
- 9RBF|1|Z|U|8, 9RBF|1|Z|U|48, 9RBF|1|Z|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9RBF_005 not in the Motif Atlas
- Homologous match to J4_5J8B_015
- Geometric discrepancy: 0.2747
- The information below is about J4_5J8B_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.2
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 49
Unit IDs
9RBF|1|Z|G|7
9RBF|1|Z|U|8
9RBF|1|Z|A|9
9RBF|1|Z|G|10
*
9RBF|1|Z|C|26
9RBF|1|Z|A|27
9RBF|1|Z|A|28
*
9RBF|1|Z|U|44
9RBF|1|Z|G|45
9RBF|1|Z|G|46
9RBF|1|Z|G|47
9RBF|1|Z|U|48
9RBF|1|Z|C|49
9RBF|1|Z|G|50
*
9RBF|1|Z|U|66
9RBF|1|Z|C|67
Current chains
- Chain Z
- P-site tRNA-Pro
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- Small ribosomal subunit protein uS13
- Chain Y
- Transfer RNA; tRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 50S ribosomal protein L16
Coloring options: