J4_9RBF_007

3D structure

PDB id

9RBF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with the membrane protein insertase SecYEG-YidC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9RBF_007 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.0951

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9RBF|1|a|G|297
9RBF|1|a|G|298
9RBF|1|a|A|299
9RBF|1|a|A|300
9RBF|1|a|G|301
*
9RBF|1|a|C|316
9RBF|1|a|G|317
9RBF|1|a|C|318
9RBF|1|a|G|319
*
9RBF|1|a|C|323
9RBF|1|a|A|324
9RBF|1|a|G|325
*
9RBF|1|a|C|337
9RBF|1|a|G|338
9RBF|1|a|U|339
9RBF|1|a|A|340
9RBF|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24