J4_9RFW_003

3D structure

PDB id

9RFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9RFW|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RFW|1|a|C|268
9RFW|1|a|C|269
*
9RFW|1|a|G|370
9RFW|1|a|A|371
9RFW|1|a|G|372
9RFW|1|a|U|373
9RFW|1|a|A|374
9RFW|1|a|G|375
*
9RFW|1|a|U|399
9RFW|1|a|G|400
9RFW|1|a|A|401
9RFW|1|a|A|402
9RFW|1|a|U|403
9RFW|1|a|A|404
9RFW|1|a|U|405
9RFW|1|a|G|406
*
9RFW|1|a|C|421
9RFW|1|a|A|422
9RFW|1|a|A|423
9RFW|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28