J4_9RFW_004

3D structure

PDB id

9RFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9RFW_004 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.095

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9RFW|1|a|G|297
9RFW|1|a|G|298
9RFW|1|a|A|299
9RFW|1|a|A|300
9RFW|1|a|G|301
*
9RFW|1|a|C|316
9RFW|1|a|G|317
9RFW|1|a|C|318
9RFW|1|a|G|319
*
9RFW|1|a|C|323
9RFW|1|a|A|324
9RFW|1|a|G|325
*
9RFW|1|a|C|337
9RFW|1|a|G|338
9RFW|1|a|U|339
9RFW|1|a|A|340
9RFW|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24