J4_9RFW_005

3D structure

PDB id

9RFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9RFW|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RFW|1|a|C|601
9RFW|1|a|A|602
9RFW|1|a|A|603
9RFW|1|a|G|604
*
9RFW|1|a|C|624
9RFW|1|a|G|625
9RFW|1|a|A|626
9RFW|1|a|A|627
9RFW|1|a|G|628
*
9RFW|1|a|C|635
9RFW|1|a|G|636
9RFW|1|a|A|637
9RFW|1|a|G|638
*
9RFW|1|a|C|650
9RFW|1|a|G|651
9RFW|1|a|U|652
9RFW|1|a|U|653
9RFW|1|a|A|654
9RFW|1|a|A|655
9RFW|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain e

Large ribosomal subunit protein uL4

Chain k

50S ribosomal protein L15