J4_9RFW_008

3D structure

PDB id

9RFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

9RFW|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RFW|1|a|U|1313
9RFW|1|a|C|1314
*
9RFW|1|a|G|1338
9RFW|1|a|G|1339
9RFW|1|a|U|1340
9RFW|1|a|G|1341
9RFW|1|a|A|1342
9RFW|1|a|G|1343
*
9RFW|1|a|C|1404
9RFW|1|a|U|1405
*
9RFW|1|a|A|1597
9RFW|1|a|A|1598
9RFW|1|a|U|1599
9RFW|1|a|C|1600
9RFW|1|a|G|1601
9RFW|1|a|U|1602
9RFW|1|a|A|1603

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23