J4_9RFW_010

3D structure

PDB id

9RFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RFW|1|a|A|1772
9RFW|1|a|A|1773
9RFW|1|a|C|1774
9RFW|1|a|U|1775
9RFW|1|a|G|1776
*
9RFW|1|a|C|1788
9RFW|1|a|A|1789
9RFW|1|a|C|1790
9RFW|1|a|A|1791
9RFW|1|a|G|1792
*
9RFW|1|a|U|1827
9RFW|1|a|G|1828
9RFW|1|a|A|1829
9RFW|1|a|C|1830
*
9RFW|1|a|G|1975
9RFW|1|a|U|1976
9RFW|1|a|A|1977
9RFW|1|a|A|1978
9RFW|1|a|U|1979

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2