J4_9RHU_003

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9RHU|1|A3|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RHU|1|A3|C|111
9RHU|1|A3|C|112
*
9RHU|1|A3|G|278
9RHU|1|A3|A|279
9RHU|1|A3|G|280
9RHU|1|A3|U|281
9RHU|1|A3|C|282
9RHU|1|A3|G|283
*
9RHU|1|A3|C|304
9RHU|1|A3|A|305
9RHU|1|A3|A|306
9RHU|1|A3|A|307
9RHU|1|A3|G|308
9RHU|1|A3|C|309
9RHU|1|A3|G|310
*
9RHU|1|A3|U|327
9RHU|1|A3|A|328
9RHU|1|A3|A|329
9RHU|1|A3|G|330

Current chains

Chain A3

28S rRNA

Nearby chains

Chain H2

Large ribosomal subunit protein eL13

Chain J2

Ribosomal protein L15

Chain d2

60S ribosomal protein L35

Chain e2

Large ribosomal subunit protein eL36